Biochemistry, Genetics and Molecular Biology · MapleScholar Plus

The Bacterial Mugshot Gallery: How a Rejected 2005 Paper Discovered CRISPR

Mysterious repeating DNA sequences in bacteria were dismissed for decades as useless junk DNA; Francisco Mojica discovered that bacteria store stolen snippets of viral DNA like a "Most Wanted" gallery to recognize and destroy invading viruses. Published in 2005 after being rejected by four leading journals, Mojica’s paper unlocked the biological secret of CRISPR, unleashing the greatest gene-editing revolution in human history.

Author
Francisco J. M. Mojica et al.
Published
2005
Journal
Journal of Molecular Evolution
Last updated
September 2026
The Bacterial Mugshot Gallery: How a Rejected 2005 Paper Discovered CRISPR

In the 1990s, microbiologists studying the genomes of salt-marsh microbes noticed strange palindromic DNA patterns that repeated over and over with random mystery spacers in between. For years, the scientific establishment ignored these repeats, assuming they were meaningless evolutionary junk.

Spanish microbiologist Francisco Mojica typed the mystery spacer sequences into a global DNA database and discovered an astonishing pattern: every single spacer matched the DNA of viruses that attack bacteria. Bacteria were keeping a biological "Most Wanted" photo gallery—storing snippets of past viral invaders so RNA-guided molecular scissors could chop them up upon reinfection.

Mojica coined the term CRISPR and proved it was a bacterial immune system. By inspiring Doudna and Charpentier to turn CRISPR into a programmable gene-editing tool, by curing hereditary sickle cell anemia, and by rewriting the code of life, Mojica’s discovery transformed biology.

Reference

Mojica, F. J. M., D�ez-Villase�or, C., Garc�a-Mart�nez, J., & Soria, E. (2005). Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements. Journal of Molecular Evolution, 60(2), 174–182.

Title

Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements

Abstract

Prokaryotes contain short DN repeats known as CRISPR, recognizable by the regular spacing existing between the recurring units. They represent the most widely distributed family of repeats among prokaryotic genomes suggesting a biological function. The origin of the intervening sequences, at present unknown, could provide clues about their biological activities. Here we show that CRISPR spacers derive from preexisting sequences, either chromosomal or within transmissible genetic elements such as bacteriophages and conjugative plasmids. Remarkably, these extrachromosomal elements fail to infect the specific spacer-carrier strain, implying a relationship between CRISPR and immunity against targeted DNA. Bacteriophages and conjugative plasmids are involved in prokaryotic population control, evolution, and pathogenicity. All these biological traits could be influenced by the presence of specific spacers. CRISPR loci can be visualized as mosaics of a repeated unit, separated by sequences at some time present elsewhere in the cell.

Cited 2,211 times · View on doi.org

Continue

Continue Exploring

Ask this paper your own questions, or keep browsing the verified research catalogue.